About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_115884618_115891263_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
115884618 - 115891263
Intron Length:
6646

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTTGTG
5'SS Class:
major
3'SS Sequence:
GATTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
ATGGTCTTGATT
Flanking Amino Acid:
KPWGWRRRKRDPNCKLEDKA
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
69.2
41.7
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
84.5
0.78
0.8
81.5
35.8
Minor 5ss
35.3
-1.7
3.5
49.3
46.9
Minor BPS
60.6
0.42
1.4
71.97
39.8

Associated Gene:

Gene:
ZNF521
Ensembl Gene ID:
ENSAPLG00000003518
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003581
115884494 - 116098276
213783