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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_116068747_116071436_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
116068747 - 116071436
Intron Length:
2690

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCGAT
5'SS Class:
strong_major
3'SS Sequence:
TCTATTATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TTGTCTATTATT
Flanking Amino Acid:
GTFKCPVCFTVFVQANKLQQ
Intron Amino Acid Position:
1292

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
72.3
39.5
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
84
0.76
0.8
81.5
34.7
Minor 5ss
36.6
-1.5
3.7
54.5
49.7
Minor BPS
53.7
0.2
1.9
76.42
40.6

Associated Gene:

Gene:
ZNF521
Ensembl Gene ID:
ENSAPLG00000003518
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003581
115884494 - 116098276
213783
ENSAPLT00000018912
115884494 - 116098276
213783