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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_116179678_116183459_R

Intron Information:

Intron Rank:
141716
Intron Class:
major
Intron Phase:
Intron Coordinates:
116179678 - 116183459
Intron Length:
3782

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTCT
5'SS Class:
strong_major
3'SS Sequence:
TTCACTTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TGCTTCTTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.2
31.7
Major BPS
77.5
0.68
1
79.6
33
Major PPT
77.1
0.61
0.9
72.5
37.5
Minor 5ss
39.4
-1.2
3.3
56.7
47.6
Minor BPS
65.3
0.56
1.8
79.89
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023604
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029724
116176853 - 116183583
6731