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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_116243328_116250071_R

Intron Information:

Intron Rank:
138554
Intron Class:
major
Intron Phase:
Intron Coordinates:
116243328 - 116250071
Intron Length:
6744

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
AATGTTTGATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAA
U12 Branch Point Sequence:
TTTTCCTCAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83
23.8
Major BPS
73.1
0.58
1
73.8
32.3
Major PPT
60.6
0.24
1.1
60
45.1
Minor 5ss
37.3
-1.4
3
46.9
48.4
Minor BPS
75.6
0.66
1.5
79.83
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022029
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039821
116242973 - 116250596
7624