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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_116250185_116250353_R

Intron Information:

Intron Rank:
138555
Intron Class:
major
Intron Phase:
Intron Coordinates:
116250185 - 116250353
Intron Length:
169

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTCTTAAC
5'SS Class:
major
3'SS Sequence:
TTCAATTATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTTTTCAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65
0.35
1.2
66.5
38.9
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
71
0.47
0.9
66.3
39.4
Minor 5ss
31.4
-2.1
2.7
37.7
39.7
Minor BPS
71.4
0.75
1.4
87.38
32.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022029
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041396
116229961 - 116250596
20636
ENSAPLT00000039821
116242973 - 116250596
7624