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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_116281902_116286032_R

Intron Information:

Intron Rank:
148800
Intron Class:
major
Intron Phase:
Intron Coordinates:
116281902 - 116286032
Intron Length:
4131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAAG
5'SS Class:
strong_major
3'SS Sequence:
TCCTCCCATCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATCTTTATAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
74
36.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
74.5
0.55
0.9
66
34.9
Minor 5ss
32.2
-2
3
39.4
46.1
Minor BPS
65.1
0.55
1.7
82.13
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027535
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039116
116255552 - 116286136
30585