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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_116301602_116304218_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
116301602 - 116304218
Intron Length:
2617

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGAACA
5'SS Class:
major
3'SS Sequence:
CCTTTTCTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCAAA
U12 Branch Point Sequence:
ATTACCTGAGTA
Flanking Amino Acid:
YDRFLSVTKAVSYRVQRGIM
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.1
67.7
37.2
Major BPS
62.7
0.32
1.2
71
33.2
Major PPT
84.2
0.77
0.7
79.2
26.5
Minor 5ss
36.7
-1.5
3
52
44.2
Minor BPS
54.3
0.13
1.7
67.93
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025102
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039060
116299298 - 116307174
7877