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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_116315984_116317537_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
116315984 - 116317537
Intron Length:
1554

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTGTTTTGAATT
Flanking Amino Acid:
LVEYNYVHSVDESSKQAGKS
Intron Amino Acid Position:
291

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
84
27.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
85
0.79
0.8
82.2
34.1
Minor 5ss
44.9
-0.5
2.8
58.5
40.5
Minor BPS
66.3
0.59
1.3
79.83
36.8

Associated Gene:

Gene:
IMPACT
Ensembl Gene ID:
ENSAPLG00000002625
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002694
116314472 - 116334514
20043