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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_116317673_116320665_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
116317673 - 116320665
Intron Length:
2993

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTATAGAA
5'SS Class:
major
3'SS Sequence:
TTGTTATAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TTGTTATAAACA
Flanking Amino Acid:
AGGRLLHLMQILDVHNVLVV
Intron Amino Acid Position:
246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.2
65.3
34
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
70.9
0.47
1.1
67.3
42.1
Minor 5ss
26.2
-2.7
3
30.5
42.6
Minor BPS
56.2
0.19
1.9
71.79
40.5

Associated Gene:

Gene:
IMPACT
Ensembl Gene ID:
ENSAPLG00000002625
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002694
116314472 - 116334514
20043