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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_116322500_116326979_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
116322500 - 116326979
Intron Length:
4480

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTTAGTAGA
5'SS Class:
major
3'SS Sequence:
GTTTTTTTTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATGAAA
U12 Branch Point Sequence:
TTTTTTTTAAAG
Flanking Amino Acid:
HLAPVVTTRQVKRVLEKLYE
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.2
72.9
38.1
Major BPS
57.6
0.19
1.3
67.9
36.3
Major PPT
80.9
0.69
1
82.2
33.3
Minor 5ss
33.2
-1.9
2.5
35.7
34
Minor BPS
72.6
0.57
1.4
75.95
35.7

Associated Gene:

Gene:
IMPACT
Ensembl Gene ID:
ENSAPLG00000002625
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002694
116314472 - 116334514
20043