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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_116329239_116332293_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
116329239 - 116332293
Intron Length:
3055

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTATCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TATTCATTCACT
Flanking Amino Acid:
ELANSLEEIYIQNLGESILY
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
1
80.5
27.7
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
89.4
0.89
0.7
81.5
35.9
Minor 5ss
42.9
-0.8
2.8
57.1
40.8
Minor BPS
65.3
0.56
2
86.69
38.7

Associated Gene:

Gene:
IMPACT
Ensembl Gene ID:
ENSAPLG00000002625
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002694
116314472 - 116334514
20043