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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_116333473_116334258_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
116333473 - 116334258
Intron Length:
786

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGTGC
5'SS Class:
major
3'SS Sequence:
GAATTTCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TTACCCTGAATT
Flanking Amino Acid:
DQPKWTLCLQVILPPGYPTS
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
65
42.1
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
77.6
0.62
0.9
74
41
Minor 5ss
36
-1.6
3.5
50.3
46.3
Minor BPS
70.7
0.73
1.4
83.84
36.4

Associated Gene:

Gene:
IMPACT
Ensembl Gene ID:
ENSAPLG00000002625
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002694
116314472 - 116334514
20043