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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_116346485_116347161_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
116346485 - 116347161
Intron Length:
677

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGCGTATC
5'SS Class:
major
3'SS Sequence:
TCCTCTCCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
GTCTTCTTAAGC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.6
1
72.8
38.5
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
82.1
0.72
0.7
76.1
26.2
Minor 5ss
34.3
-1.8
3.1
45.8
42.6
Minor BPS
65
0.45
1.7
70.25
41.4

Associated Gene:

Gene:
OSBPL1A
Ensembl Gene ID:
ENSAPLG00000015641
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016378
116346377 - 116427427
81051