About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_116357238_116359248_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
116357238 - 116359248
Intron Length:
2011

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATTTC
5'SS Class:
strong_major
3'SS Sequence:
TCTTGCCATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAGAT
U12 Branch Point Sequence:
ACATTCAGATGT
Flanking Amino Acid:
HAVVVEDLLKAGADVNVLND
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
77.3
31.9
Major BPS
74.1
0.6
1
69
38.9
Major PPT
73
0.52
0.9
70.8
35.1
Minor 5ss
50.8
0.03
2.5
69.7
41.2
Minor BPS
39
-0.7
2
52.51
42.1

Associated Gene:

Gene:
OSBPL1A
Ensembl Gene ID:
ENSAPLG00000015641
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048420
116346377 - 116427427
81051
ENSAPLT00000023113
116346377 - 116427427
81051
ENSAPLT00000016378
116346377 - 116427427
81051