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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_116368007_116369043_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
116368007 - 116369043
Intron Length:
1037

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAGGAAGT
5'SS Class:
major
3'SS Sequence:
CCCATTGCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TTATACTCATTT
Flanking Amino Acid:
CKHLTQAVCTVKSTDSCFFS
Intron Amino Acid Position:
293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.1
66.8
44.6
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
67.9
0.4
0.9
65
36.3
Minor 5ss
34.3
-1.8
3.3
49.4
46.6
Minor BPS
50.4
0.09
2
74.42
42.2

Associated Gene:

Gene:
OSBPL1A
Ensembl Gene ID:
ENSAPLG00000015641
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016378
116346377 - 116427427
81051
ENSAPLT00000048420
116346377 - 116427427
81051
ENSAPLT00000023113
116346377 - 116427427
81051