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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_116371725_116376095_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
116371725 - 116376095
Intron Length:
4371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACTT
5'SS Class:
strong_major
3'SS Sequence:
TTGGTGCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
CCCCCCTAAAGC
Flanking Amino Acid:
AMVKSLDVTKGIPSPLLQKV
Intron Amino Acid Position:
396

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
77.9
36.7
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
77.4
0.62
1
73.5
41.8
Minor 5ss
37.2
-1.4
3.4
56.5
47.6
Minor BPS
46.1
-0.3
2
50.92
46.3

Associated Gene:

Gene:
OSBPL1A
Ensembl Gene ID:
ENSAPLG00000015641
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016378
116346377 - 116427427
81051
ENSAPLT00000048420
116346377 - 116427427
81051
ENSAPLT00000023113
116346377 - 116427427
81051