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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_116376203_116400029_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
116376203 - 116400029
Intron Length:
23827

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
TATCTACTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTATTCATACAT
Flanking Amino Acid:
CLHLFTKQEGVRNLKLEHEQ
Intron Amino Acid Position:
432

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
83.5
35.1
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
76.5
0.6
0.8
70.2
35.1
Minor 5ss
47.3
-0.3
2.5
60.3
44.3
Minor BPS
49.8
0.06
2
74.83
41.5

Associated Gene:

Gene:
OSBPL1A
Ensembl Gene ID:
ENSAPLG00000015641
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048420
116346377 - 116427427
81051
ENSAPLT00000023113
116346377 - 116427427
81051
ENSAPLT00000016378
116346377 - 116427427
81051