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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_116400193_116408260_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
116400193 - 116408260
Intron Length:
8068

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TGCTCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
GATTCATTAACA
Flanking Amino Acid:
SEEQFYDAVSDSESEKSLSG
Intron Amino Acid Position:
486

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.9
28.7
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
85.1
0.79
0.8
80.1
31.9
Minor 5ss
37.5
-1.4
2.8
51.6
44.9
Minor BPS
73.1
0.72
1.5
79.29
36

Associated Gene:

Gene:
OSBPL1A
Ensembl Gene ID:
ENSAPLG00000015641
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048420
116346377 - 116427427
81051
ENSAPLT00000023113
116346377 - 116427427
81051
ENSAPLT00000016378
116346377 - 116427427
81051