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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_116408418_116413464_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
116408418 - 116413464
Intron Length:
5047

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGATGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTTAC
U12 Branch Point Sequence:
TCTTCCCCATTT
Flanking Amino Acid:
ESMSNGIKKHRTSLPSPMFS
Intron Amino Acid Position:
538

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
72.5
39.9
Major BPS
69.2
0.48
1
61
37.1
Major PPT
87.8
0.85
0.6
83.8
24.5
Minor 5ss
38.3
-1.3
3.4
56.2
48
Minor BPS
48.4
-0
2.1
72.84
44.3

Associated Gene:

Gene:
OSBPL1A
Ensembl Gene ID:
ENSAPLG00000015641
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023113
116346377 - 116427427
81051
ENSAPLT00000016378
116346377 - 116427427
81051
ENSAPLT00000048420
116346377 - 116427427
81051