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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_116413541_116414945_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
116413541 - 116414945
Intron Length:
1405

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGGGTAAT
5'SS Class:
major
3'SS Sequence:
ATTTGTGCATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TGGTTTTTAACA
Flanking Amino Acid:
WSILRKCIGMELSKITMPVI
Intron Amino Acid Position:
564

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
75.8
35.2
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
69.6
0.44
1
67.5
43.1
Minor 5ss
30.7
-2.2
3
38.1
41.3
Minor BPS
73.6
0.74
1.2
75.27
36.4

Associated Gene:

Gene:
OSBPL1A
Ensembl Gene ID:
ENSAPLG00000015641
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048420
116346377 - 116427427
81051
ENSAPLT00000023113
116346377 - 116427427
81051
ENSAPLT00000016378
116346377 - 116427427
81051