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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_116415506_116416224_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
116415506 - 116416224
Intron Length:
719

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGAAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTATTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
ATTTTTGGAACC
Flanking Amino Acid:
PLLGETYELIRDDLGFRLLS
Intron Amino Acid Position:
641

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
74.9
34.9
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
89.2
0.88
0.7
84.2
30.3
Minor 5ss
32.6
-2
3.1
42.6
44.5
Minor BPS
49.8
-0
2.1
68.84
36.8

Associated Gene:

Gene:
OSBPL1A
Ensembl Gene ID:
ENSAPLG00000015641
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023113
116346377 - 116427427
81051
ENSAPLT00000016378
116346377 - 116427427
81051
ENSAPLT00000048420
116346377 - 116427427
81051