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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_116424056_116424713_F

Intron Information:

Intron Rank:
28
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
116424056 - 116424713
Intron Length:
658

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCGTG
5'SS Class:
strong_major
3'SS Sequence:
CCTCCAAACGAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
TTTCCTCCAAAC
Flanking Amino Acid:
RSKSEEDWKTSHPSSQSPRW
Intron Amino Acid Position:
921

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.9
76.2
39.9
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
50.2
0.01
1
49.8
30.7
Minor 5ss
39.9
-1.1
3.4
55
49.2
Minor BPS
48.1
-0.1
1.9
66.59
38.3

Associated Gene:

Gene:
OSBPL1A
Ensembl Gene ID:
ENSAPLG00000015641
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048420
116346377 - 116427427
81051
ENSAPLT00000016378
116346377 - 116427427
81051