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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_116424056_116427324_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
116424056 - 116427324
Intron Length:
3269

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCGTG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTAAC
U12 Branch Point Sequence:
GCTTCCCTAACG
Flanking Amino Acid:
RSKSEEDWKTRWFHQGPNPY
Intron Amino Acid Position:
921

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.9
76.2
39.9
Major BPS
59.7
0.24
1.1
61.2
32.6
Major PPT
86.8
0.83
0.8
80.7
31.5
Minor 5ss
39.9
-1.1
3.4
55
49.2
Minor BPS
65.3
0.34
1.8
69.09
43.9

Associated Gene:

Gene:
OSBPL1A
Ensembl Gene ID:
ENSAPLG00000015641
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023113
116346377 - 116427427
81051