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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_116435916_116438565_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
116435916 - 116438565
Intron Length:
2650

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGATACA
5'SS Class:
major
3'SS Sequence:
CTTCCAACGGGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCCAAC
U12 Branch Point Sequence:
GAACCTGTAAGG
Flanking Amino Acid:
MKMTELSVPES
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.1
66.7
38.6
Major BPS
61.9
0.3
1.2
70.7
33.5
Major PPT
47
-0.1
1.7
51.7
36.9
Minor 5ss
34.1
-1.8
3
39.8
40.9
Minor BPS
41.8
-0.7
2.2
43.5
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022835
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033245
116426951 - 116438568
11618