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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_116451169_116451304_F

Intron Information:

Intron Rank:
1
Intron Class:
minor-like
Intron Phase:
1
Intron Coordinates:
116451169 - 116451304
Intron Length:
136

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTGTCTTTA
5'SS Class:
weak_minor
3'SS Sequence:
AGATTGAGATGAG|T
3'SS Class:
degenerate_minor
U2 Branch Point Sequence:
CCATCAT
U12 Branch Point Sequence:
GCATCCTCTACA
Flanking Amino Acid:
KIHKEQGRSQLRLHSNAKAL
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.6
0.02
1.2
56.7
38.8
Major BPS
63.3
0.33
1.2
65.6
39.7
Major PPT
42.2
-0.4
1.7
41.4
46.5
Minor 5ss
56.9
0.23
2.3
66.4
45.1
Minor BPS
51.3
0.03
1.9
61.43
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003336
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003392
116450598 - 116451552
955