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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_116511227_116519605_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
116511227 - 116519605
Intron Length:
8379

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
ATTTCATTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TCTTGCTTATTT
Flanking Amino Acid:
IVLGGTKVREDTTSTECSLQ
Intron Amino Acid Position:
205

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.7
81.3
32.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
79.2
0.66
0.8
71
39.3
Minor 5ss
30.9
-2.2
3.2
39.6
46.4
Minor BPS
59.4
0.37
2
79.24
43.6

Associated Gene:

Gene:
OPRK1
Ensembl Gene ID:
ENSAPLG00000003797
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003874
116510694 - 116535200
24507