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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_116519959_116534872_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
116519959 - 116534872
Intron Length:
14914

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTATTATTATTT
Flanking Amino Acid:
GNSLVMFVIIRYTKMKTATN
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.8
73.3
36.4
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
88
0.85
0.7
85.6
29.1
Minor 5ss
30.8
-2.2
3.3
41.8
45
Minor BPS
56.7
0.29
1.8
77.56
39

Associated Gene:

Gene:
OPRK1
Ensembl Gene ID:
ENSAPLG00000003797
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003874
116510694 - 116535200
24507