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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_116564537_116573013_R

Intron Information:

Intron Rank:
150664
Intron Class:
major
Intron Phase:
Intron Coordinates:
116564537 - 116573013
Intron Length:
8477

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TCCTCCCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTACCTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1.2
81.8
38.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83.4
0.75
0.7
80.6
24.7
Minor 5ss
34.8
-1.7
2.7
42.5
44.3
Minor BPS
72.4
0.78
1.6
87.55
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028552
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038493
116564195 - 116577192
12998