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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_116573219_116577153_R

Intron Information:

Intron Rank:
150665
Intron Class:
major
Intron Phase:
Intron Coordinates:
116573219 - 116577153
Intron Length:
3935

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
CCTGTTTTTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTTAA
U12 Branch Point Sequence:
GCTACCTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
84.9
25
Major BPS
60.9
0.27
1
51.6
35
Major PPT
80.6
0.69
0.8
75.5
33
Minor 5ss
33
-1.9
3.2
42.9
44.7
Minor BPS
79.1
0.99
1.2
85.8
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028552
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038493
116564195 - 116577192
12998