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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_116578797_116603156_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
116578797 - 116603156
Intron Length:
24360

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACAGATG
5'SS Class:
major
3'SS Sequence:
TTCCCTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTTTCTTTTGCT
Flanking Amino Acid:
KRQEQPSDIRGRHSLRRRWL
Intron Amino Acid Position:
502

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.1
66.9
44.1
Major BPS
85
0.87
0.8
85.6
23
Major PPT
83.2
0.75
0.7
76.6
32
Minor 5ss
34.2
-1.8
3.5
47.9
47.8
Minor BPS
48.1
-0
3.6
87.77
37.8

Associated Gene:

Gene:
ATP6V1H
Ensembl Gene ID:
ENSAPLG00000003861
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024714
116577968 - 116659815
81848