Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_116592271_116603156_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

116592271 - 116603156

Intron Length:

10886

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTACAGATG

5'SS Class:

major

3'SS Sequence:

TTTTTATTCTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTTTTTATTC

Flanking Amino Acid:

KRQEQPSDIRGLNPPL*

Intron Amino Acid Position:

502

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.1

0.52

1.1

66.9

44.1

Major BPS

96.5

1.15

0.6

34.2

Major PPT

89.9

0.9

0.7

89.1

26.5

Minor 5ss

34.2

-1.8

3.5

47.9

47.8

Minor BPS

67.3

0.52

1.5

77.16

33.3

Associated Gene:

Gene:

ATP6V1H

Ensembl Gene ID:

ENSAPLG00000003861

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034960

116591251 - 116658527

67277

ENSAPLT00000027216

116591251 - 116659815

68565