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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_116603288_116632159_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
116603288 - 116632159
Intron Length:
28872

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGAGGC
5'SS Class:
major
3'SS Sequence:
TTCCTAATTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTCCTAATT
Flanking Amino Acid:
LAVQKLMVHNWSLHLDSATD
Intron Amino Acid Position:
458

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
58.7
38.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
68.5
0.42
1.1
68.8
35.1
Minor 5ss
37
-1.5
3.3
47.1
43.8
Minor BPS
74.5
0.85
1.6
92.26
30

Associated Gene:

Gene:
ATP6V1H
Ensembl Gene ID:
ENSAPLG00000003861
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024714
116577968 - 116659815
81848
ENSAPLT00000034960
116591251 - 116658527
67277
ENSAPLT00000027216
116591251 - 116659815
68565