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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_116631461_116632159_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
116631461 - 116632159
Intron Length:
699

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGAGGC
5'SS Class:
major
3'SS Sequence:
TTCCCATTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAC
U12 Branch Point Sequence:
TGCCTCTTTACA
Flanking Amino Acid:
LAVQKLMVHNWDVSGVFLES
Intron Amino Acid Position:
458

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
58.7
38.9
Major BPS
72.8
0.57
1
81
30.3
Major PPT
72
0.49
1
75.5
32.1
Minor 5ss
37
-1.5
3.3
47.1
43.8
Minor BPS
56.6
0.2
1.7
65.22
40.7

Associated Gene:

Gene:
ATP6V1H
Ensembl Gene ID:
ENSAPLG00000003861
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004004
116631278 - 116659815
28538