About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_116632274_116636673_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
116632274 - 116636673
Intron Length:
4400

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
TGTGAAAAAACT
Flanking Amino Acid:
EYVRHYPRGKRVIEQLGGKQ
Intron Amino Acid Position:
420

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
77.3
32.8
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
86.9
0.83
0.7
84.6
30.4
Minor 5ss
33.3
-1.9
2.9
41.3
44.8
Minor BPS
41
-0.6
2.2
64.09
45.4

Associated Gene:

Gene:
ATP6V1H
Ensembl Gene ID:
ENSAPLG00000003861
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004004
116631278 - 116659815
28538
ENSAPLT00000045993
116622429 - 116659815
37387
ENSAPLT00000034960
116591251 - 116658527
67277
ENSAPLT00000027216
116591251 - 116659815
68565
ENSAPLT00000024714
116577968 - 116659815
81848