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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_116636776_116638305_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
116636776 - 116638305
Intron Length:
1530

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAGGTTTT
5'SS Class:
major
3'SS Sequence:
GTTTCTTTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAA
U12 Branch Point Sequence:
AAACCAAAAACT
Flanking Amino Acid:
RLNEKNYELLKILTKLLEVS
Intron Amino Acid Position:
386

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
81.6
33.2
Major BPS
62
0.3
1
62.3
30.4
Major PPT
79.9
0.67
0.8
73.3
37.1
Minor 5ss
46.5
-0.4
3.1
66.5
39
Minor BPS
43.2
-0.4
2
60.96
41.5

Associated Gene:

Gene:
ATP6V1H
Ensembl Gene ID:
ENSAPLG00000003861
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027216
116591251 - 116659815
68565
ENSAPLT00000024714
116577968 - 116659815
81848
ENSAPLT00000004004
116631278 - 116659815
28538
ENSAPLT00000045993
116622429 - 116659815
37387
ENSAPLT00000034960
116591251 - 116658527
67277