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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_116638432_116639189_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
116638432 - 116639189
Intron Length:
758

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGGTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCATTCAGG
Flanking Amino Acid:
DKLGESVQDLSSFDEYSSEL
Intron Amino Acid Position:
344

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
81.2
33.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
85.6
0.8
0.8
80.6
31.4
Minor 5ss
48.8
-0.1
3.1
72.7
44.5
Minor BPS
47.9
-0.3
2.3
62.83
44.8

Associated Gene:

Gene:
ATP6V1H
Ensembl Gene ID:
ENSAPLG00000003861
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024714
116577968 - 116659815
81848
ENSAPLT00000004004
116631278 - 116659815
28538
ENSAPLT00000045993
116622429 - 116659815
37387
ENSAPLT00000034960
116591251 - 116658527
67277
ENSAPLT00000027216
116591251 - 116659815
68565