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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_116647467_116648350_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
116647467 - 116648350
Intron Length:
884

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
TCTGATTTTACG
Flanking Amino Acid:
NWIKTQLSSQKLRGSVEAGA
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
72.3
37.6
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
89.6
0.89
0.6
84.8
30
Minor 5ss
33.2
-1.9
3
43.7
43.6
Minor BPS
47.4
-0.3
2
55.79
45.6

Associated Gene:

Gene:
ATP6V1H
Ensembl Gene ID:
ENSAPLG00000003861
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024714
116577968 - 116659815
81848
ENSAPLT00000004004
116631278 - 116659815
28538
ENSAPLT00000045993
116622429 - 116659815
37387
ENSAPLT00000034960
116591251 - 116658527
67277
ENSAPLT00000027216
116591251 - 116659815
68565