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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_116650026_116653060_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
116650026 - 116653060
Intron Length:
3035

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAGGTCAA
5'SS Class:
major
3'SS Sequence:
CTTATTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
CTCTCCTTATTT
Flanking Amino Acid:
ILTMVDDMLQENHQRVCIFF
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1.1
67.9
39.2
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
88.7
0.87
0.7
83.4
31.6
Minor 5ss
33.8
-1.8
3.2
40.4
40
Minor BPS
67.7
0.63
1.6
79.24
43.6

Associated Gene:

Gene:
ATP6V1H
Ensembl Gene ID:
ENSAPLG00000003861
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034960
116591251 - 116658527
67277
ENSAPLT00000027216
116591251 - 116659815
68565
ENSAPLT00000024714
116577968 - 116659815
81848
ENSAPLT00000004004
116631278 - 116659815
28538
ENSAPLT00000045993
116622429 - 116659815
37387