Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_116653151_116653593_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

116653151 - 116653593

Intron Length:

443

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAATTTTC

5'SS Class:

major

3'SS Sequence:

TTTTATTTTCTAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTAATATTAATT

Flanking Amino Acid:

QELLQTEGNQCAKTFINLMT

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.2

0.64

77.9

30.9

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

87.9

0.85

0.7

81.4

35.9

Minor 5ss

46.5

-0.4

2.7

36.6

Minor BPS

62.3

0.47

1.6

78.63

37.3

Associated Gene:

Gene:

ATP6V1H

Ensembl Gene ID:

ENSAPLG00000003861

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024714

116577968 - 116659815

81848

ENSAPLT00000004004

116631278 - 116659815

28538

ENSAPLT00000045993

116622429 - 116659815

37387

ENSAPLT00000034960

116591251 - 116658527

67277

ENSAPLT00000027216

116591251 - 116659815

68565