Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_116653697_116659687_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

116653697 - 116659687

Intron Length:

5991

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCA|GTAAGTAAA

5'SS Class:

major

3'SS Sequence:

CTTTGCTTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCTAAT

U12 Branch Point Sequence:

GGTTTCACACTT

Flanking Amino Acid:

ANKVNWQSYLQGQMISGEDC

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.4

0.67

77.3

32.8

Major BPS

79.3

0.73

1.1

77.9

34.9

Major PPT

87.1

0.84

0.7

84.4

30.5

Minor 5ss

37.2

-1.4

2.8

47.9

41.8

Minor BPS

-0.3

62.39

41.7

Associated Gene:

Gene:

ATP6V1H

Ensembl Gene ID:

ENSAPLG00000003861

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024714

116577968 - 116659815

81848

ENSAPLT00000004004

116631278 - 116659815

28538

ENSAPLT00000045993

116622429 - 116659815

37387

ENSAPLT00000027216

116591251 - 116659815

68565