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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_116667287_116707675_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
116667287 - 116707675
Intron Length:
40389

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTTAC
U12 Branch Point Sequence:
CGTGTCTTACTT
Flanking Amino Acid:
DIKTVQQLLKPMGSERMEMR
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.1
39.5
Major BPS
63.8
0.34
1.2
57.4
41.4
Major PPT
90
0.9
0.7
84.9
29.9
Minor 5ss
33.4
-1.9
3.4
48.4
47.3
Minor BPS
52
0.14
1.8
67.31
44.3

Associated Gene:

Gene:
RGS20
Ensembl Gene ID:
ENSAPLG00000004749
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004886
116667164 - 116715500
48337