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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_116707825_116712859_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
116707825 - 116712859
Intron Length:
5035

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACTACGC
5'SS Class:
major
3'SS Sequence:
TGCTACCTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
CTTTATGAAACT
Flanking Amino Acid:
FCWCCCCSCSCLTVRNQEEE
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.3
0.24
1.1
46.5
42
Major BPS
83
0.82
0.8
82
24.9
Major PPT
76.8
0.6
0.9
69.6
36.4
Minor 5ss
31.5
-2.1
3.3
40
40.6
Minor BPS
46.1
-0.2
2.4
72
45.3

Associated Gene:

Gene:
RGS20
Ensembl Gene ID:
ENSAPLG00000004749
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004886
116667164 - 116715500
48337