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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_116712947_116713787_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
116712947 - 116713787
Intron Length:
841

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGTCT
5'SS Class:
strong_major
3'SS Sequence:
CTCCTTCCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTCAT
U12 Branch Point Sequence:
TCTTCTTGCCCT
Flanking Amino Acid:
QAEGIPNCEESPAPTLEEVN
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
74.8
35.8
Major BPS
74.8
0.62
0.9
75.3
29.7
Major PPT
81.2
0.7
0.7
72.9
32
Minor 5ss
45.5
-0.5
3.1
65.3
46.1
Minor BPS
40.3
-0.6
3.6
71.98
45.3

Associated Gene:

Gene:
RGS20
Ensembl Gene ID:
ENSAPLG00000004749
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004886
116667164 - 116715500
48337