About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_116721522_116722607_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
116721522 - 116722607
Intron Length:
1086

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTGACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TTTCTTTTGACA
Flanking Amino Acid:
VCNECGNRWKFC*
Intron Amino Acid Position:
303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
80.8
33.7
Major BPS
78.6
0.71
1
78.6
31
Major PPT
85.5
0.8
0.9
83.5
31.6
Minor 5ss
35.5
-1.6
3.2
47.7
47.7
Minor BPS
71.5
0.67
1.1
79.17
30

Associated Gene:

Gene:
TCEA1
Ensembl Gene ID:
ENSAPLG00000004621
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004768
116721513 - 116749482
27970