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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_116723723_116726544_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
116723723 - 116726544
Intron Length:
2822

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTATAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTAAA
U12 Branch Point Sequence:
TTGTCTATAACA
Flanking Amino Acid:
PDKLAKMTAEEMASDELKEM
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.9
1.13
0.6
92.3
16.1
Major BPS
67.4
0.43
1.1
67.9
36.3
Major PPT
74.8
0.56
1
70.7
38.7
Minor 5ss
35
-1.7
2.7
41.8
44.8
Minor BPS
70.5
0.64
1.6
80.15
35.8

Associated Gene:

Gene:
TCEA1
Ensembl Gene ID:
ENSAPLG00000004621
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004768
116721513 - 116749482
27970