About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_116728940_116729944_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
116728940 - 116729944
Intron Length:
1005

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTAGT
5'SS Class:
major
3'SS Sequence:
TGCCTTTTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
ACATATGTAATA
Flanking Amino Acid:
SQNSPEAREESSSSSNSSSR
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
74.8
41.3
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
79.8
0.67
0.8
72.7
37.5
Minor 5ss
36.5
-1.5
3
52.2
44.2
Minor BPS
45.7
-0.3
2.1
54.95
38.3

Associated Gene:

Gene:
TCEA1
Ensembl Gene ID:
ENSAPLG00000004621
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004768
116721513 - 116749482
27970