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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_116730033_116738324_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
116730033 - 116738324
Intron Length:
8292

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGTGA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTATTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TGTTTTGTATTC
Flanking Amino Acid:
SLIKSWKKLLDGPSTDKDSE
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.93
0.9
75.7
36.7
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
81.5
0.71
0.9
73.7
40.8
Minor 5ss
36.1
-1.6
3.3
47.1
48.3
Minor BPS
46.5
-0.2
2.1
61.73
38.7

Associated Gene:

Gene:
TCEA1
Ensembl Gene ID:
ENSAPLG00000004621
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004768
116721513 - 116749482
27970