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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_116760179_116761678_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
116760179 - 116761678
Intron Length:
1500

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTTTC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTGAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TCTCTTTGAACA
Flanking Amino Acid:
SGMMHSSCIEEMMDVKQFID
Intron Amino Acid Position:
214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
84.2
27.6
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
75.2
0.57
1
72.6
36.4
Minor 5ss
44.8
-0.6
2.8
61.7
43.1
Minor BPS
60.7
0.33
1.4
69
37.4

Associated Gene:

Gene:
LYPLA1
Ensembl Gene ID:
ENSAPLG00000004475
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004597
116759692 - 116770232
10541