About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_116761856_116762510_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
116761856 - 116762510
Intron Length:
655

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTATG
5'SS Class:
major
3'SS Sequence:
TCATCCTGGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
CCCCCTTTAAAT
Flanking Amino Acid:
WLPLRTSFAQGTISGVNKEI
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
76.3
38.9
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
64.3
0.32
1.1
60.7
40.1
Minor 5ss
45.5
-0.5
2.5
59.8
44.7
Minor BPS
57.6
0.32
1.5
65.96
44.8

Associated Gene:

Gene:
LYPLA1
Ensembl Gene ID:
ENSAPLG00000004475
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004597
116759692 - 116770232
10541