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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_116762613_116763365_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
116762613 - 116763365
Intron Length:
753

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTGTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
GTTACCTTCACC
Flanking Amino Acid:
NRIILGGFSQGGALSLYTAL
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
84.7
28.2
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
80.8
0.69
0.8
80.5
31.5
Minor 5ss
38.4
-1.3
3.4
55
49.2
Minor BPS
66.5
0.5
1.8
76.16
39.8

Associated Gene:

Gene:
LYPLA1
Ensembl Gene ID:
ENSAPLG00000004475
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004597
116759692 - 116770232
10541